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protein genbank id gi number organism orf1594 yp 400611 1 81300403 synechococcus elongatus pcc7942 pmt9312  (ATCC)
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ATCC protein genbank id gi number organism orf1594 yp 400611 1 81300403 synechococcus elongatus pcc7942 pmt9312
Protein Genbank Id Gi Number Organism Orf1594 Yp 400611 1 81300403 Synechococcus Elongatus Pcc7942 Pmt9312, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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a VHH60 inhibits pseudovirus carrying wildtype spike protein infection on Caco-2 cell line. b VHH60 inhibits ancestral SARS-CoV-2 infection on Vero-E6. c Survival curve of mice infected by SARS-CoV-2. Vehicle group all died at 4 d.p.i (5/5), one in VHH60 group (1/5) died. d Body weight change of mice infected by SARS-CoV-2. Data is represented as ratio of body weights at indicated timepoint versus day 0 ( n = 10 at 0 and 3 d.p.i, n = 4 at 4 d.p.i, n = 5 at 5.d.p.i). e Virus load in lung after 3 days of infection ( n = 5). f Representative image of immunofluorescence from lung. Blue: Nuclei, Red: <t>ACE2,</t> Green: nucleocapsid protein (NP). g Representative image of hematoxylin-eosin (H&E) staining from the lung. Scar bar, 2000 μm in the up row, 150 μm in the down row. One-way ANOVA with Tukey’s multiple comparison test was used. * P < 0.05. Error bars represent the means with SDs.
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human codon optimized sars-cov-2 spike (ancestral 2019-ncov/usa-wa1/2020, genbank mn985325.1) with 21 deletion in the c-terminus (s2-δ21)  (Thermo Fisher)
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a VHH60 inhibits pseudovirus carrying wildtype spike protein infection on Caco-2 cell line. b VHH60 inhibits ancestral SARS-CoV-2 infection on Vero-E6. c Survival curve of mice infected by SARS-CoV-2. Vehicle group all died at 4 d.p.i (5/5), one in VHH60 group (1/5) died. d Body weight change of mice infected by SARS-CoV-2. Data is represented as ratio of body weights at indicated timepoint versus day 0 ( n = 10 at 0 and 3 d.p.i, n = 4 at 4 d.p.i, n = 5 at 5.d.p.i). e Virus load in lung after 3 days of infection ( n = 5). f Representative image of immunofluorescence from lung. Blue: Nuclei, Red: <t>ACE2,</t> Green: nucleocapsid protein (NP). g Representative image of hematoxylin-eosin (H&E) staining from the lung. Scar bar, 2000 μm in the up row, 150 μm in the down row. One-way ANOVA with Tukey’s multiple comparison test was used. * P < 0.05. Error bars represent the means with SDs.
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Image Search Results


a VHH60 inhibits pseudovirus carrying wildtype spike protein infection on Caco-2 cell line. b VHH60 inhibits ancestral SARS-CoV-2 infection on Vero-E6. c Survival curve of mice infected by SARS-CoV-2. Vehicle group all died at 4 d.p.i (5/5), one in VHH60 group (1/5) died. d Body weight change of mice infected by SARS-CoV-2. Data is represented as ratio of body weights at indicated timepoint versus day 0 ( n = 10 at 0 and 3 d.p.i, n = 4 at 4 d.p.i, n = 5 at 5.d.p.i). e Virus load in lung after 3 days of infection ( n = 5). f Representative image of immunofluorescence from lung. Blue: Nuclei, Red: ACE2, Green: nucleocapsid protein (NP). g Representative image of hematoxylin-eosin (H&E) staining from the lung. Scar bar, 2000 μm in the up row, 150 μm in the down row. One-way ANOVA with Tukey’s multiple comparison test was used. * P < 0.05. Error bars represent the means with SDs.

Journal: Cell Death & Disease

Article Title: A broad neutralizing nanobody against SARS-CoV-2 engineered from an approved drug

doi: 10.1038/s41419-024-06802-7

Figure Lengend Snippet: a VHH60 inhibits pseudovirus carrying wildtype spike protein infection on Caco-2 cell line. b VHH60 inhibits ancestral SARS-CoV-2 infection on Vero-E6. c Survival curve of mice infected by SARS-CoV-2. Vehicle group all died at 4 d.p.i (5/5), one in VHH60 group (1/5) died. d Body weight change of mice infected by SARS-CoV-2. Data is represented as ratio of body weights at indicated timepoint versus day 0 ( n = 10 at 0 and 3 d.p.i, n = 4 at 4 d.p.i, n = 5 at 5.d.p.i). e Virus load in lung after 3 days of infection ( n = 5). f Representative image of immunofluorescence from lung. Blue: Nuclei, Red: ACE2, Green: nucleocapsid protein (NP). g Representative image of hematoxylin-eosin (H&E) staining from the lung. Scar bar, 2000 μm in the up row, 150 μm in the down row. One-way ANOVA with Tukey’s multiple comparison test was used. * P < 0.05. Error bars represent the means with SDs.

Article Snippet: The constructs of VHHs were selected from phage display, RBD fragment (aa319-541) of SARS-CoV-2 S protein (GenBank: MN908947.3) was synthesized by Genewiz Inc, the extracellular domain of human ACE2 (1-740 aa) (GenBank: NM_021804.1) was amplified from a plasmid (Cat. # HG10108-ACG, Sinobiologic).

Techniques: Infection, Virus, Immunofluorescence, Staining, Comparison

a Cryo-EM for the Spike-VHH60 complex observed to a resolution of 3.79 Å, revealing binding of VHH60 to RBDs in the “1-up” conformation. b Comparison of the epitope between VHH60 (light sea green) and VHH72 (salmon, PDB ID: 6WAQ). c CDR loops of VHH60 (cornflower) overlaid on the surface epitope (salmon) representation of RBD (light sea green). d The hydrogen bonds at the binding interface between VHH60 and SARS-CoV-2 RBD based on the crystal structure of the complex at 3.40 Å. e Superposition of the RBD-ACE2 model (PDB ID:7XO9) to that of the VHH60- RBD model shows there is a steric hindrance between VHH60 and ACE2.

Journal: Cell Death & Disease

Article Title: A broad neutralizing nanobody against SARS-CoV-2 engineered from an approved drug

doi: 10.1038/s41419-024-06802-7

Figure Lengend Snippet: a Cryo-EM for the Spike-VHH60 complex observed to a resolution of 3.79 Å, revealing binding of VHH60 to RBDs in the “1-up” conformation. b Comparison of the epitope between VHH60 (light sea green) and VHH72 (salmon, PDB ID: 6WAQ). c CDR loops of VHH60 (cornflower) overlaid on the surface epitope (salmon) representation of RBD (light sea green). d The hydrogen bonds at the binding interface between VHH60 and SARS-CoV-2 RBD based on the crystal structure of the complex at 3.40 Å. e Superposition of the RBD-ACE2 model (PDB ID:7XO9) to that of the VHH60- RBD model shows there is a steric hindrance between VHH60 and ACE2.

Article Snippet: The constructs of VHHs were selected from phage display, RBD fragment (aa319-541) of SARS-CoV-2 S protein (GenBank: MN908947.3) was synthesized by Genewiz Inc, the extracellular domain of human ACE2 (1-740 aa) (GenBank: NM_021804.1) was amplified from a plasmid (Cat. # HG10108-ACG, Sinobiologic).

Techniques: Cryo-EM Sample Prep, Binding Assay, Comparison